PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 9138
Common NameMICPUCDRAFT_9138
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 89aa    MW: 10063.6 Da    PI: 9.8295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
9138genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-06932323
             ET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2  3 Cp..dCgksFsrksnLkrHirt.H 23
             C+   Cgk+F  + +L +H ++ H
     9138  9 CEhpGCGKVFAWSQDLAKHVKKiH 32
             77779****************999 PP

2zf-C2H215.16.5e-053963123
             EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
             + C    Cgk F  k +L+ H rtH
     9138 39 FHCAheGCGKAFHEKKLLTAHTRTH 63
             678889******************9 PP

3zf-C2H211.80.000766989119
             EEET..TTTEEESSHHHHHHH CS
  zf-C2H2  1 ykCp..dCgksFsrksnLkrH 19
             + Cp   C+k F+ +  L  H
     9138 69 FACPhpGCDKAFRARNALAYH 89
             789999**********99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.217737IPR007087Zinc finger, C2H2
SMARTSM003550.0024732IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-9833IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-6850No hitNo description
PROSITE patternPS000280932IPR007087Zinc finger, C2H2
SMARTSM003550.123963IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-103962IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.8353968IPR007087Zinc finger, C2H2
SuperFamilySSF576675.92E-114089No hitNo description
PROSITE patternPS0002804163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-136389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551506989IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0376989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
NGPRPKVMCE HPGCGKVFAW SQDLAKHVKK IHNREAPKFH CAHEGCGKAF HEKKLLTAHT  60
RTHTDERPFA CPHPGCDKAF RARNALAYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-1428931113PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061423.18e-61predicted protein, partial
TrEMBLC1N0P49e-61C1N0P4_MICPC; Predicted protein (Fragment)
STRINGENSGACP000000183245e-17(Gasterosteus aculeatus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1065024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.14e-13C2H2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]